Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs59746564 chr15:83233157 T/C 2.11E-5 477 31.25 30.3 29 KM Plot
PRAD rs59757520 chr5:178974649 G/A 0.000156 480 30.77 35.93 24.38 KM Plot
PRAD rs59853503 chr17:79639983 C/T 6.14E-5 489 30.48 31.37 25.17 KM Plot
PRAD rs59904668 chr5:138023789 A/ACT 8.14E-6 494 30.8 31.27 25.2 KM Plot
PRAD rs5992134 chr22:18433994 G/T 1.75E-5 483 29.23 32.9 26.03 KM Plot
PRAD rs5992135 chr22:18447114 C/T 4.04E-6 492 30.8 31.87 26.58 KM Plot
PRAD rs59927585 chr7:43675965 TA/T 4.98E-5 487 15.87 29.63 32.13 KM Plot
PRAD rs5992904 chr22:18415158 A/G 5.05E-5 486 29.13 32.83 25.02 KM Plot
PRAD rs5992917 chr22:18443699 G/T 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs5992919 chr22:18443855 A/G 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs5992921 chr22:18445263 C/T 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs5992922 chr22:18445287 A/G 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs5992925 chr22:18447697 G/A 3.96E-6 493 30.8 31.87 26.58 KM Plot
PRAD rs5992926 chr22:18449876 A/G 2.94E-6 489 30.8 31.9 27.08 KM Plot
PRAD rs5992928 chr22:18451438 A/C 9.98E-6 484 30.77 31.93 27.08 KM Plot